Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lnau_1207 | Lnau_1208 | Lnau_1207 | Lnau_1208 | Metal dependent phosphoesterase. | Translation factor; Belongs to the SUA5 family. | 0.850 |
Lnau_1207 | rluB | Lnau_1207 | Lnau_1212 | Metal dependent phosphoesterase. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.629 |
Lnau_1207 | scpA | Lnau_1207 | Lnau_1210 | Metal dependent phosphoesterase. | Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.629 |
Lnau_1207 | scpB | Lnau_1207 | Lnau_1211 | Metal dependent phosphoesterase. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.629 |
Lnau_1207 | trpS | Lnau_1207 | Lnau_1209 | Metal dependent phosphoesterase. | tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.629 |
Lnau_1208 | Lnau_1207 | Lnau_1208 | Lnau_1207 | Translation factor; Belongs to the SUA5 family. | Metal dependent phosphoesterase. | 0.850 |
Lnau_1208 | Lnau_2513 | Lnau_1208 | Lnau_2513 | Translation factor; Belongs to the SUA5 family. | O-sialoglycoprotein endopeptidase. | 0.616 |
Lnau_1208 | Lnau_2993 | Lnau_1208 | Lnau_2993 | Translation factor; Belongs to the SUA5 family. | ATPase or kinase. | 0.616 |
Lnau_1208 | gcp | Lnau_1208 | Lnau_0430 | Translation factor; Belongs to the SUA5 family. | DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.631 |
Lnau_1208 | hemK | Lnau_1208 | Lnau_2442 | Translation factor; Belongs to the SUA5 family. | Protein methyltransferase HemK; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. | 0.745 |
Lnau_1208 | rluB | Lnau_1208 | Lnau_1212 | Translation factor; Belongs to the SUA5 family. | Pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. | 0.657 |
Lnau_1208 | scpA | Lnau_1208 | Lnau_1210 | Translation factor; Belongs to the SUA5 family. | Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. | 0.649 |
Lnau_1208 | scpB | Lnau_1208 | Lnau_1211 | Translation factor; Belongs to the SUA5 family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.654 |
Lnau_1208 | trpS | Lnau_1208 | Lnau_1209 | Translation factor; Belongs to the SUA5 family. | tryptophanyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.649 |
Lnau_1208 | yggH | Lnau_1208 | Lnau_0394 | Translation factor; Belongs to the SUA5 family. | tRNA (m7G46) methyltransferase, SAM-dependent; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.520 |
Lnau_2513 | Lnau_1208 | Lnau_2513 | Lnau_1208 | O-sialoglycoprotein endopeptidase. | Translation factor; Belongs to the SUA5 family. | 0.616 |
Lnau_2513 | Lnau_2993 | Lnau_2513 | Lnau_2993 | O-sialoglycoprotein endopeptidase. | ATPase or kinase. | 0.993 |
Lnau_2513 | gcp | Lnau_2513 | Lnau_0430 | O-sialoglycoprotein endopeptidase. | DNA-binding/iron metalloprotein/AP endonuclease; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.989 |
Lnau_2993 | Lnau_1208 | Lnau_2993 | Lnau_1208 | ATPase or kinase. | Translation factor; Belongs to the SUA5 family. | 0.616 |
Lnau_2993 | Lnau_2513 | Lnau_2993 | Lnau_2513 | ATPase or kinase. | O-sialoglycoprotein endopeptidase. | 0.993 |
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