Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lnau_1680 | erpA | Lnau_1680 | Lnau_1243 | Glycine cleavage T protein. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.709 |
| Lnau_2328 | erpA | Lnau_2328 | Lnau_1243 | Hypothetical protein. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.714 |
| Lnau_2482 | Lnau_2483 | Lnau_2482 | Lnau_2483 | Cysteine desulfurase. | ATP transporter ATP- binding protein. | 0.999 |
| Lnau_2482 | Lnau_2484 | Lnau_2482 | Lnau_2484 | Cysteine desulfurase. | ABC transporter permease. | 0.999 |
| Lnau_2482 | erpA | Lnau_2482 | Lnau_1243 | Cysteine desulfurase. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.676 |
| Lnau_2482 | nifU | Lnau_2482 | Lnau_2486 | Cysteine desulfurase. | Nitrogen fixation protein NifU. | 0.978 |
| Lnau_2482 | nifU_1 | Lnau_2482 | Lnau_0118 | Cysteine desulfurase. | NifU-like protein. | 0.888 |
| Lnau_2483 | Lnau_2482 | Lnau_2483 | Lnau_2482 | ATP transporter ATP- binding protein. | Cysteine desulfurase. | 0.999 |
| Lnau_2483 | Lnau_2484 | Lnau_2483 | Lnau_2484 | ATP transporter ATP- binding protein. | ABC transporter permease. | 0.999 |
| Lnau_2483 | erpA | Lnau_2483 | Lnau_1243 | ATP transporter ATP- binding protein. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.689 |
| Lnau_2483 | nifU | Lnau_2483 | Lnau_2486 | ATP transporter ATP- binding protein. | Nitrogen fixation protein NifU. | 0.983 |
| Lnau_2483 | nifU_1 | Lnau_2483 | Lnau_0118 | ATP transporter ATP- binding protein. | NifU-like protein. | 0.907 |
| Lnau_2484 | Lnau_2482 | Lnau_2484 | Lnau_2482 | ABC transporter permease. | Cysteine desulfurase. | 0.999 |
| Lnau_2484 | Lnau_2483 | Lnau_2484 | Lnau_2483 | ABC transporter permease. | ATP transporter ATP- binding protein. | 0.999 |
| Lnau_2484 | erpA | Lnau_2484 | Lnau_1243 | ABC transporter permease. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.679 |
| Lnau_2484 | nifU | Lnau_2484 | Lnau_2486 | ABC transporter permease. | Nitrogen fixation protein NifU. | 0.982 |
| Lnau_2484 | nifU_1 | Lnau_2484 | Lnau_0118 | ABC transporter permease. | NifU-like protein. | 0.888 |
| djlA | erpA | Lnau_2436 | Lnau_1243 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.899 |
| djlA | grlA | Lnau_2436 | Lnau_0566 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Glutaredoxin-like protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.716 |
| djlA | iscS | Lnau_2436 | Lnau_0119 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Cysteine desulfurase NifS. | 0.918 |
page 1 of 3