STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rubRRubredoxin. (81 aa)    
Predicted Functional Partners:
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.777
Lnau_1950
Phosphate acetyl/butaryl transferase.
     
 0.678
Lnau_0057
2-oxoglutarate ferredoxin oxidoreductase beta subunit.
    
 0.666
Lnau_2178
Glutamate synthase.
    
  0.647
kdgK
2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family.
       0.615
hemL
Glutamate-1-semialdehyde-2,1-aminomutase.
       0.615
Lnau_1638
Phosphate acetyl/butaryl transferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
 
  
 0.504
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase protein.
    
 0.481
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.481
fur
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.467
Your Current Organism:
Legionella nautarum
NCBI taxonomy Id: 45070
Other names: ATCC 49506, CCUG 44900, CIP 105270, DSM 21805, L. nautarum, NCTC 12375, NCTC 12932
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