Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lnau_0180 | Lnau_0592 | Lnau_0180 | Lnau_0592 | Hypothetical protein. | Polyketide synthase module. | 0.796 |
Lnau_0180 | Lnau_0656 | Lnau_0180 | Lnau_0656 | Hypothetical protein. | Polyketide synthase. | 0.489 |
Lnau_0180 | Lnau_2817 | Lnau_0180 | Lnau_2817 | Hypothetical protein. | stearoyl-CoA-9-desaturase. | 0.514 |
Lnau_0180 | rkpA | Lnau_0180 | Lnau_0662 | Hypothetical protein. | Type I polyketide synthase WcbR. | 0.828 |
Lnau_0416 | Lnau_0592 | Lnau_0416 | Lnau_0592 | Acetyl CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Polyketide synthase module. | 0.894 |
Lnau_0416 | Lnau_0656 | Lnau_0416 | Lnau_0656 | Acetyl CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Polyketide synthase. | 0.708 |
Lnau_0416 | Lnau_2817 | Lnau_0416 | Lnau_2817 | Acetyl CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | stearoyl-CoA-9-desaturase. | 0.563 |
Lnau_0416 | rkpA | Lnau_0416 | Lnau_0662 | Acetyl CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | Type I polyketide synthase WcbR. | 0.858 |
Lnau_0592 | Lnau_0180 | Lnau_0592 | Lnau_0180 | Polyketide synthase module. | Hypothetical protein. | 0.796 |
Lnau_0592 | Lnau_0416 | Lnau_0592 | Lnau_0416 | Polyketide synthase module. | Acetyl CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.894 |
Lnau_0592 | Lnau_0656 | Lnau_0592 | Lnau_0656 | Polyketide synthase module. | Polyketide synthase. | 0.955 |
Lnau_0592 | Lnau_1865 | Lnau_0592 | Lnau_1865 | Polyketide synthase module. | Ferredoxin reductase. | 0.984 |
Lnau_0592 | Lnau_2817 | Lnau_0592 | Lnau_2817 | Polyketide synthase module. | stearoyl-CoA-9-desaturase. | 0.768 |
Lnau_0592 | Lnau_2818 | Lnau_0592 | Lnau_2818 | Polyketide synthase module. | Acetyoacetyl CoA reductase. | 0.705 |
Lnau_0592 | phaB2 | Lnau_0592 | Lnau_2819 | Polyketide synthase module. | Acetyoacetyl CoA reductase. | 0.705 |
Lnau_0592 | rkpA | Lnau_0592 | Lnau_0662 | Polyketide synthase module. | Type I polyketide synthase WcbR. | 0.999 |
Lnau_0656 | Lnau_0180 | Lnau_0656 | Lnau_0180 | Polyketide synthase. | Hypothetical protein. | 0.489 |
Lnau_0656 | Lnau_0416 | Lnau_0656 | Lnau_0416 | Polyketide synthase. | Acetyl CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.708 |
Lnau_0656 | Lnau_0592 | Lnau_0656 | Lnau_0592 | Polyketide synthase. | Polyketide synthase module. | 0.955 |
Lnau_0656 | Lnau_2817 | Lnau_0656 | Lnau_2817 | Polyketide synthase. | stearoyl-CoA-9-desaturase. | 0.657 |
page 1 of 4