Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lpar_0717 | ascD | Lpar_0717 | Lpar_0718 | Hypothetical protein. | NAD(P)H-flavin reductase. | 0.791 |
Lpar_0717 | rho | Lpar_0717 | Lpar_0720 | Hypothetical protein. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.509 |
Lpar_0717 | ubiD | Lpar_0717 | Lpar_0719 | Hypothetical protein. | 3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family. | 0.791 |
ascD | Lpar_0717 | Lpar_0718 | Lpar_0717 | NAD(P)H-flavin reductase. | Hypothetical protein. | 0.791 |
ascD | rho | Lpar_0718 | Lpar_0720 | NAD(P)H-flavin reductase. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.514 |
ascD | ubiD | Lpar_0718 | Lpar_0719 | NAD(P)H-flavin reductase. | 3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family. | 0.883 |
rho | Lpar_0717 | Lpar_0720 | Lpar_0717 | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Hypothetical protein. | 0.509 |
rho | ascD | Lpar_0720 | Lpar_0718 | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | NAD(P)H-flavin reductase. | 0.514 |
rho | ubiD | Lpar_0720 | Lpar_0719 | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family. | 0.515 |
ubiD | Lpar_0717 | Lpar_0719 | Lpar_0717 | 3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family. | Hypothetical protein. | 0.791 |
ubiD | ascD | Lpar_0719 | Lpar_0718 | 3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family. | NAD(P)H-flavin reductase. | 0.883 |
ubiD | rho | Lpar_0719 | Lpar_0720 | 3-polyprenyl-4-hydroxybenzoate decarboxylase; Belongs to the UbiD family. | Hypothetical protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.515 |