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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lpar_1102Coiled-coil protein. (411 aa)    
Predicted Functional Partners:
fkbM_1
Methoxymalonyl CoA synthase.
 
   
 0.842
chiD
Chitinase.
 
  
 0.836
Lpar_3147
Hypothetical protein.
 
 
 0.826
Lpar_0485
Coenzyme F390 synthetase.
  
  
  0.791
xynY
Endo-1,4-beta-xylanase Y precursor.
 
     0.783
Lpar_1915
Ankyrin repeat-containing protein.
  
    0.780
Lpar_1869
Ankyrin repeat protein.
 
   
 0.776
Lpar_0862
RasGEF domain protein.
  
     0.774
Lpar_1056
Hypothetical protein.
  
    0.774
Lpar_1266
Cyclic nucleotide-binding protein.
  
  
  0.774
Your Current Organism:
Legionella parisiensis
NCBI taxonomy Id: 45071
Other names: ATCC 35299, CCUG 29670, CIP 103847, DSM 19216, JCM 7561, L. parisiensis, Legionella parisensis, NCTC 11983, strain PF-209C-C2
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