Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lpar_1085 | Lpar_1532 | Lpar_1085 | Lpar_1532 | Hypothetical protein. | Hypothetical protein. | 0.610 |
Lpar_1085 | Lpar_1623 | Lpar_1085 | Lpar_1623 | Hypothetical protein. | acyl-CoA synthetase. | 0.657 |
Lpar_1085 | apxIB | Lpar_1085 | Lpar_0463 | Hypothetical protein. | Toxin secretion ABC transporter ATP-binding protein. | 0.420 |
Lpar_1132 | Lpar_1532 | Lpar_1132 | Lpar_1532 | Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family protein. | Hypothetical protein. | 0.610 |
Lpar_1132 | Lpar_1623 | Lpar_1132 | Lpar_1623 | Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family protein. | acyl-CoA synthetase. | 0.657 |
Lpar_1132 | apxIB | Lpar_1132 | Lpar_0463 | Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family protein. | Toxin secretion ABC transporter ATP-binding protein. | 0.559 |
Lpar_1532 | Lpar_1085 | Lpar_1532 | Lpar_1085 | Hypothetical protein. | Hypothetical protein. | 0.610 |
Lpar_1532 | Lpar_1132 | Lpar_1532 | Lpar_1132 | Hypothetical protein. | Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family protein. | 0.610 |
Lpar_1532 | Lpar_1623 | Lpar_1532 | Lpar_1623 | Hypothetical protein. | acyl-CoA synthetase. | 0.497 |
Lpar_1532 | apxIB | Lpar_1532 | Lpar_0463 | Hypothetical protein. | Toxin secretion ABC transporter ATP-binding protein. | 0.509 |
Lpar_1532 | fliN | Lpar_1532 | Lpar_2946 | Hypothetical protein. | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.489 |
Lpar_1532 | gatC | Lpar_1532 | Lpar_2817 | Hypothetical protein. | glutamyl-tRNA(Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.527 |
Lpar_1532 | nadK | Lpar_1532 | Lpar_0595 | Hypothetical protein. | Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.485 |
Lpar_1532 | per1 | Lpar_1532 | Lpar_1531 | Hypothetical protein. | Beta-lactamase. | 0.535 |
Lpar_1532 | sodB | Lpar_1532 | Lpar_0745 | Hypothetical protein. | Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.496 |
Lpar_1532 | sodC | Lpar_1532 | Lpar_1732 | Hypothetical protein. | Superoxide dismutase, Cu, Zn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.484 |
Lpar_1623 | Lpar_1085 | Lpar_1623 | Lpar_1085 | acyl-CoA synthetase. | Hypothetical protein. | 0.657 |
Lpar_1623 | Lpar_1132 | Lpar_1623 | Lpar_1132 | acyl-CoA synthetase. | Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family protein. | 0.657 |
Lpar_1623 | Lpar_1532 | Lpar_1623 | Lpar_1532 | acyl-CoA synthetase. | Hypothetical protein. | 0.497 |
Lpar_1623 | sodB | Lpar_1623 | Lpar_0745 | acyl-CoA synthetase. | Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.884 |
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