Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traJ_2TraJ protein. (117 aa)    
Predicted Functional Partners:
traI_2
TraI protein.
 
     0.949
traL_2
traL protein.
 
     0.851
traI_1
TraI protein.
 
   
 0.816
trbJ
Conjugal transfer protein trbJ precursor.
 
   
 0.806
traC
DNA primase traC.
 
     0.797
trbL
Conjugal transfer protein trbL.
 
     0.788
traL_1
traL protein.
 
     0.782
trbD
Conjugal transfer protein trbD.
  
     0.773
trbF
Conjugal transfer protein trbF.
  
     0.770
traF
Conjugal transfer protein TraF.
 
     0.767
Your Current Organism:
Legionella parisiensis
NCBI taxonomy Id: 45071
Other names: ATCC 35299, CCUG 29670, CIP 103847, DSM 19216, JCM 7561, L. parisiensis, Legionella parisensis, NCTC 11983, strain PF-209C-C2
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