Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lpar_2145Protein LvrA. (234 aa)    
Predicted Functional Partners:
lexA_3
Putative prophage repressor CI-like protein.
 
     0.759
Lpar_3354
Cysteine protease.
  
     0.757
Lpar_1316
Protein IcmE (DotG).
 
     0.753
Lpar_0349
IcmF.
  
     0.748
Lpar_0321
Putative membrane protein YdgA-like protein.
  
     0.747
Lpar_1987
Protein-tyrosine phosphatase.
  
     0.746
Lpar_2534
Hypothetical protein.
  
     0.726
Lpar_0989
HTH-type transcriptional regulator.
  
     0.719
Lpar_2922
Secreted protein.
  
     0.709
ung
uracil-DNA glycosylase; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.
  
     0.708
Your Current Organism:
Legionella parisiensis
NCBI taxonomy Id: 45071
Other names: ATCC 35299, CCUG 29670, CIP 103847, DSM 19216, JCM 7561, L. parisiensis, Legionella parisensis, NCTC 11983, strain PF-209C-C2
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