STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
patA_3Alginate O-acetylation protein; Belongs to the membrane-bound acyltransferase family. (489 aa)    
Predicted Functional Partners:
Lpar_3635
Polyketide synthase.
  
 0.918
fkbM_1
Methoxymalonyl CoA synthase.
 
 0.906
lgrB
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 0.874
tycC_2
Peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.858
Lpar_2999
Hypothetical protein.
    
  0.850
patA_2
Alginate O-acetylation protein.
  
     0.774
Lpar_1623
acyl-CoA synthetase.
  
  0.635
Lpar_3014
acyl-CoA synthetase.
  
  0.589
Lpar_0389
Saframycin Mx1 synthetase B.
  
  0.587
lgrD
Non-ribosomal peptide synthase.
 
 
 0.576
Your Current Organism:
Legionella parisiensis
NCBI taxonomy Id: 45071
Other names: ATCC 35299, CCUG 29670, CIP 103847, DSM 19216, JCM 7561, L. parisiensis, Legionella parisensis, NCTC 11983, strain PF-209C-C2
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