Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lpar_1067 | Lpar_3192 | Lpar_1067 | Lpar_3192 | Hypothetical protein. | ATP synthase protein I. | 0.680 |
Lpar_1067 | atpC_2 | Lpar_1067 | Lpar_3191 | Hypothetical protein. | F-type H -transporting ATPase epsilon chain. | 0.740 |
Lpar_1067 | atpF_2 | Lpar_1067 | Lpar_3195 | Hypothetical protein. | F-type H -transporting ATPase b chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.432 |
Lpar_1067 | atpG_1 | Lpar_1067 | Lpar_3197 | Hypothetical protein. | Hypothetical protein; ATP synthase subunit gamma C-terminus. | 0.429 |
Lpar_3192 | Lpar_1067 | Lpar_3192 | Lpar_1067 | ATP synthase protein I. | Hypothetical protein. | 0.680 |
Lpar_3192 | atpA_1-2 | Lpar_3192 | Lpar_3196 | ATP synthase protein I. | ATP synthase F0F1 subunit alpha. | 0.931 |
Lpar_3192 | atpB_1-2 | Lpar_3192 | Lpar_3193 | ATP synthase protein I. | ATP synthase F0F1 subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.972 |
Lpar_3192 | atpB_2 | Lpar_3192 | Lpar_0793 | ATP synthase protein I. | H+-transporting ATP synthase chain a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.690 |
Lpar_3192 | atpC_2 | Lpar_3192 | Lpar_3191 | ATP synthase protein I. | F-type H -transporting ATPase epsilon chain. | 0.953 |
Lpar_3192 | atpD_1 | Lpar_3192 | Lpar_3190 | ATP synthase protein I. | ATP synthase F0F1 subunit beta. | 0.918 |
Lpar_3192 | atpE_1 | Lpar_3192 | Lpar_3194 | ATP synthase protein I. | ATP synthase C subunit (H transporting ATP synthase); F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.973 |
Lpar_3192 | atpF_2 | Lpar_3192 | Lpar_3195 | ATP synthase protein I. | F-type H -transporting ATPase b chain; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family. | 0.984 |
Lpar_3192 | atpG | Lpar_3192 | Lpar_0798 | ATP synthase protein I. | H+-transporting ATP synthase chain gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.641 |
Lpar_3192 | atpG_1 | Lpar_3192 | Lpar_3197 | ATP synthase protein I. | Hypothetical protein; ATP synthase subunit gamma C-terminus. | 0.966 |
atpA_1-2 | Lpar_3192 | Lpar_3196 | Lpar_3192 | ATP synthase F0F1 subunit alpha. | ATP synthase protein I. | 0.931 |
atpA_1-2 | atpB_1-2 | Lpar_3196 | Lpar_3193 | ATP synthase F0F1 subunit alpha. | ATP synthase F0F1 subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.999 |
atpA_1-2 | atpB_2 | Lpar_3196 | Lpar_0793 | ATP synthase F0F1 subunit alpha. | H+-transporting ATP synthase chain a; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family. | 0.998 |
atpA_1-2 | atpC_2 | Lpar_3196 | Lpar_3191 | ATP synthase F0F1 subunit alpha. | F-type H -transporting ATPase epsilon chain. | 0.998 |
atpA_1-2 | atpD_1 | Lpar_3196 | Lpar_3190 | ATP synthase F0F1 subunit alpha. | ATP synthase F0F1 subunit beta. | 0.999 |
atpA_1-2 | atpE_1 | Lpar_3196 | Lpar_3194 | ATP synthase F0F1 subunit alpha. | ATP synthase C subunit (H transporting ATP synthase); F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
page 1 of 5