Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lpar_1255 | proC_1 | Lpar_1255 | Lpar_3334 | 2OG-Fe(II) oxygenase. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.558 |
Lpar_1623 | Lpar_2594 | Lpar_1623 | Lpar_2594 | acyl-CoA synthetase. | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | 0.644 |
Lpar_1623 | arcB_5 | Lpar_1623 | Lpar_0820 | acyl-CoA synthetase. | Ornithine cyclodeaminase. | 0.466 |
Lpar_1623 | argD | Lpar_1623 | Lpar_0746 | acyl-CoA synthetase. | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.518 |
Lpar_1623 | bioA | Lpar_1623 | Lpar_2543 | acyl-CoA synthetase. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.829 |
Lpar_1623 | dapF | Lpar_1623 | Lpar_1223 | acyl-CoA synthetase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.596 |
Lpar_1623 | fni | Lpar_1623 | Lpar_0608 | acyl-CoA synthetase. | Isopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.630 |
Lpar_1623 | lysAC_2 | Lpar_1623 | Lpar_2977 | acyl-CoA synthetase. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | 0.621 |
Lpar_1623 | proC_1 | Lpar_1623 | Lpar_3334 | acyl-CoA synthetase. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.596 |
Lpar_1623 | putA | Lpar_1623 | Lpar_2571 | acyl-CoA synthetase. | Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.815 |
Lpar_2594 | Lpar_1623 | Lpar_2594 | Lpar_1623 | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | acyl-CoA synthetase. | 0.644 |
Lpar_2594 | fni | Lpar_2594 | Lpar_0608 | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | Isopentenyl pyrophosphate isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.769 |
Lpar_2594 | proC_1 | Lpar_2594 | Lpar_3334 | NAD+-dependent formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.606 |
arcB_5 | Lpar_1623 | Lpar_0820 | Lpar_1623 | Ornithine cyclodeaminase. | acyl-CoA synthetase. | 0.466 |
arcB_5 | argD | Lpar_0820 | Lpar_0746 | Ornithine cyclodeaminase. | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.619 |
arcB_5 | lysAC_2 | Lpar_0820 | Lpar_2977 | Ornithine cyclodeaminase. | Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC). | 0.641 |
arcB_5 | proC_1 | Lpar_0820 | Lpar_3334 | Ornithine cyclodeaminase. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.716 |
arcB_5 | putA | Lpar_0820 | Lpar_2571 | Ornithine cyclodeaminase. | Bifunctional PutA protein (proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase); Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family. | 0.824 |
argD | Lpar_1623 | Lpar_0746 | Lpar_1623 | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | acyl-CoA synthetase. | 0.518 |
argD | arcB_5 | Lpar_0746 | Lpar_0820 | Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | Ornithine cyclodeaminase. | 0.619 |
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