STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lqua_0258Alanyl tRNA synthetase. (67 aa)    
Predicted Functional Partners:
rhmT
Major facilitator family transporter.
       0.795
Lqua_0481
GNAT family acetyltransferase.
  
     0.601
aacA4
Aminoglycoside N(6')acetyltransferase.
  
     0.567
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
     
 0.520
aph
Spectinomycin phosphotransferase.
  
     0.464
Lqua_2821
GNAT family acetyltransferase.
  
     0.451
Lqua_0482
Putative aminoglycoside phosphotransferase.
  
     0.450
Lqua_0479
GNAT family acetyltransferase.
  
     0.444
Lqua_0825
Hypothetical protein.
  
     0.435
Lqua_0485
D12 class N6 adenine-specific DNA methyltransferase.
  
     0.427
Your Current Organism:
Legionella quateirensis
NCBI taxonomy Id: 45072
Other names: ATCC 49507, CCUG 44899, CIP 105271, L. quateirensis, NCTC 12376
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