STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apxIB_2Toxin secretion ATP binding protein. (719 aa)    
Predicted Functional Partners:
lssD
Secretion system protein D.
 0.992
bepC
Agglutination protein.
 
 
 0.856
Lqua_1307
Branched-chain alpha-keto acid dehydrogenase subunit E2.
  
 0.836
Lqua_2077
Periplasmic protein.
 
   
 0.793
Lqua_0880
Hypothetical protein.
 
     0.770
msbA
ABC transporter, ATP binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
 
0.769
Lqua_0413
Multidrug resistance ABC transporter ATP binding protein.
  
 
 
0.765
Lqua_3439
Multidrug resistance ABC transporter ATP-binding protein (fused permease/ATPase domains).
  
 
 
0.765
Lqua_3176
ABC transporter ATP-binding protein.
  
 
 
0.764
tolC_1
Outer membrane protein TolC.
 
 
 0.751
Your Current Organism:
Legionella quateirensis
NCBI taxonomy Id: 45072
Other names: ATCC 49507, CCUG 44899, CIP 105271, L. quateirensis, NCTC 12376
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