Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lqui_0577 | sdbA | Lqui_0577 | Lqui_1920 | Glycosyl transferase family 2. | SdbA protein, substrate of the Dot/Icm system. | 0.805 |
Lqui_1980 | cphA_1 | Lqui_1980 | Lqui_0142 | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | Cyanophycin synthetase. | 0.967 |
Lqui_1980 | cphA_2 | Lqui_1980 | Lqui_0226 | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | Cyanophycin synthetase. | 0.967 |
Lqui_1980 | ftsQ | Lqui_1980 | Lqui_0155 | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.902 |
Lqui_1980 | ftsW | Lqui_1980 | Lqui_0159 | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | Cell division protein ftsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.768 |
Lqui_1980 | ftsZ | Lqui_1980 | Lqui_0153 | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.506 |
Lqui_1980 | murD | Lqui_1980 | Lqui_0160 | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.968 |
Lqui_1980 | murF | Lqui_1980 | Lqui_1200 | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alani ne ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.913 |
Lqui_1980 | sdbA | Lqui_1980 | Lqui_1920 | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | SdbA protein, substrate of the Dot/Icm system. | 0.873 |
cphA_1 | Lqui_1980 | Lqui_0142 | Lqui_1980 | Cyanophycin synthetase. | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | 0.967 |
cphA_1 | cphA_2 | Lqui_0142 | Lqui_0226 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.891 |
cphA_1 | ftsQ | Lqui_0142 | Lqui_0155 | Cyanophycin synthetase. | Cell division protein FtsQ; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. | 0.944 |
cphA_1 | ftsW | Lqui_0142 | Lqui_0159 | Cyanophycin synthetase. | Cell division protein ftsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. | 0.662 |
cphA_1 | ftsZ | Lqui_0142 | Lqui_0153 | Cyanophycin synthetase. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.662 |
cphA_1 | murC | Lqui_0142 | Lqui_0158 | Cyanophycin synthetase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.967 |
cphA_1 | murD | Lqui_0142 | Lqui_0160 | Cyanophycin synthetase. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.982 |
cphA_1 | murF | Lqui_0142 | Lqui_1200 | Cyanophycin synthetase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alani ne ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.979 |
cphA_1 | sdbA | Lqui_0142 | Lqui_1920 | Cyanophycin synthetase. | SdbA protein, substrate of the Dot/Icm system. | 0.951 |
cphA_2 | Lqui_1980 | Lqui_0226 | Lqui_1980 | Cyanophycin synthetase. | UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase. | 0.967 |
cphA_2 | cphA_1 | Lqui_0226 | Lqui_0142 | Cyanophycin synthetase. | Cyanophycin synthetase. | 0.891 |
page 1 of 5