STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lgrELinear gramicidin dehydrogenase LgrE. (263 aa)    
Predicted Functional Partners:
Lqui_1807
Non-ribosomal peptide synthetase/polyketide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
 
 
 0.997
Lqui_2544
Peptide synthetase, non-ribosomal.
 
 
 0.997
Lqui_1805
Peptide synthase.
 
 
 0.996
Lqui_2518
Non-ribosomal peptide synthetase/polyketide synthetase.
 
 
 0.988
Lqui_2547
Non-ribosomal peptide synthase.
 
 
 0.988
pksJ
Polyketide synthase, type I.
 
 
 0.972
Lqui_0649
Phosphopantetheine-protein transferase; Belongs to the P-Pant transferase superfamily.
 
  
 0.855
ribA_1
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
    0.773
ribA_2
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
    0.773
Lqui_0806
dTDP-glucose 4,6-dehydratase.
    
 0.760
Your Current Organism:
Legionella quinlivanii
NCBI taxonomy Id: 45073
Other names: ATCC 43830, CCUG 31234 A, CIP 105272, DSM 21216, L. quinlivanii, Legionella quinlivanni, NCTC 12433
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