Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lsan_1052 | Lsan_1114 | Lsan_1052 | Lsan_1114 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.999 |
Lsan_1052 | Lsan_2222 | Lsan_1052 | Lsan_2222 | acyl-CoA synthetase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.832 |
Lsan_1052 | Lsan_2556 | Lsan_1052 | Lsan_2556 | acyl-CoA synthetase. | Non-ribosomal peptide synthetase/polyketide synthetase. | 0.999 |
Lsan_1052 | Lsan_2939 | Lsan_1052 | Lsan_2939 | acyl-CoA synthetase. | Phosphate acetyl/butaryl transferase. | 0.845 |
Lsan_1052 | fadB | Lsan_1052 | Lsan_1967 | acyl-CoA synthetase. | 3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.973 |
Lsan_1052 | pta | Lsan_1052 | Lsan_1580 | acyl-CoA synthetase. | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase. | 0.845 |
Lsan_1052 | rkpA | Lsan_1052 | Lsan_3669 | acyl-CoA synthetase. | Type I polyketide synthase WcbR. | 0.999 |
Lsan_1052 | ubiA | Lsan_1052 | Lsan_0001 | acyl-CoA synthetase. | 4-hydroxybenzoate-octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.880 |
Lsan_1052 | ubiC | Lsan_1052 | Lsan_0002 | acyl-CoA synthetase. | 4-hydroxybenzoate synthetase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | 0.505 |
Lsan_1052 | yfcX | Lsan_1052 | Lsan_1303 | acyl-CoA synthetase. | Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.973 |
Lsan_1114 | Lsan_1052 | Lsan_1114 | Lsan_1052 | acyl-CoA synthetase. | acyl-CoA synthetase. | 0.999 |
Lsan_1114 | Lsan_2222 | Lsan_1114 | Lsan_2222 | acyl-CoA synthetase. | 2-oxoglutarate ferredoxin oxidoreductase subunit alpha. | 0.782 |
Lsan_1114 | Lsan_2556 | Lsan_1114 | Lsan_2556 | acyl-CoA synthetase. | Non-ribosomal peptide synthetase/polyketide synthetase. | 0.999 |
Lsan_1114 | Lsan_2939 | Lsan_1114 | Lsan_2939 | acyl-CoA synthetase. | Phosphate acetyl/butaryl transferase. | 0.821 |
Lsan_1114 | fadB | Lsan_1114 | Lsan_1967 | acyl-CoA synthetase. | 3-hydroxyacyl CoA dehydrogenase oxidoreductase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.944 |
Lsan_1114 | pta | Lsan_1114 | Lsan_1580 | acyl-CoA synthetase. | Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase. | 0.821 |
Lsan_1114 | rkpA | Lsan_1114 | Lsan_3669 | acyl-CoA synthetase. | Type I polyketide synthase WcbR. | 0.992 |
Lsan_1114 | ubiA | Lsan_1114 | Lsan_0001 | acyl-CoA synthetase. | 4-hydroxybenzoate-octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. | 0.818 |
Lsan_1114 | ubiC | Lsan_1114 | Lsan_0002 | acyl-CoA synthetase. | 4-hydroxybenzoate synthetase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | 0.443 |
Lsan_1114 | yfcX | Lsan_1114 | Lsan_1303 | acyl-CoA synthetase. | Enoyl CoA hydratase; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.944 |
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