Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lsan_0289 | emrA_1 | Lsan_0289 | Lsan_0291 | Outer membrane efflux protein. | Multidrug efflux system. | 0.897 |
Lsan_0289 | emrB_1 | Lsan_0289 | Lsan_0290 | Outer membrane efflux protein. | Multidrug efflux system protein; Belongs to the major facilitator superfamily. | 0.808 |
Lsan_0296 | emrA_1 | Lsan_0296 | Lsan_0291 | Multidrug resistance protein, MFS superfamily. | Multidrug efflux system. | 0.842 |
Lsan_0296 | emrB_3 | Lsan_0296 | Lsan_2288 | Multidrug resistance protein, MFS superfamily. | Multidrug efflux system protein. | 0.774 |
Lsan_0629 | emrA_1 | Lsan_0629 | Lsan_0291 | Multidrug efflux protein. | Multidrug efflux system. | 0.826 |
Lsan_0629 | tolC | Lsan_0629 | Lsan_2062 | Multidrug efflux protein. | Outer membrane protein TolC. | 0.444 |
Lsan_1703 | emrA_1 | Lsan_1703 | Lsan_0291 | Outer membrane efflux protein. | Multidrug efflux system. | 0.594 |
Lsan_1703 | emrB_2 | Lsan_1703 | Lsan_1705 | Outer membrane efflux protein. | Multidrug efflux system protein; Belongs to the major facilitator superfamily. | 0.817 |
Lsan_2957 | emrA_1 | Lsan_2957 | Lsan_0291 | Transporter of the major facilitator superfamily (MFS). | Multidrug efflux system. | 0.839 |
Lsan_2957 | tolC | Lsan_2957 | Lsan_2062 | Transporter of the major facilitator superfamily (MFS). | Outer membrane protein TolC. | 0.444 |
emrA_1 | Lsan_0289 | Lsan_0291 | Lsan_0289 | Multidrug efflux system. | Outer membrane efflux protein. | 0.897 |
emrA_1 | Lsan_0296 | Lsan_0291 | Lsan_0296 | Multidrug efflux system. | Multidrug resistance protein, MFS superfamily. | 0.842 |
emrA_1 | Lsan_0629 | Lsan_0291 | Lsan_0629 | Multidrug efflux system. | Multidrug efflux protein. | 0.826 |
emrA_1 | Lsan_1703 | Lsan_0291 | Lsan_1703 | Multidrug efflux system. | Outer membrane efflux protein. | 0.594 |
emrA_1 | Lsan_2957 | Lsan_0291 | Lsan_2957 | Multidrug efflux system. | Transporter of the major facilitator superfamily (MFS). | 0.839 |
emrA_1 | emrB_1 | Lsan_0291 | Lsan_0290 | Multidrug efflux system. | Multidrug efflux system protein; Belongs to the major facilitator superfamily. | 0.977 |
emrA_1 | emrB_2 | Lsan_0291 | Lsan_1705 | Multidrug efflux system. | Multidrug efflux system protein; Belongs to the major facilitator superfamily. | 0.902 |
emrA_1 | emrB_3 | Lsan_0291 | Lsan_2288 | Multidrug efflux system. | Multidrug efflux system protein. | 0.900 |
emrA_1 | emrB_4 | Lsan_0291 | Lsan_2442 | Multidrug efflux system. | Multidrug efflux system protein; Belongs to the major facilitator superfamily. | 0.903 |
emrA_1 | tolC | Lsan_0291 | Lsan_2062 | Multidrug efflux system. | Outer membrane protein TolC. | 0.743 |
page 1 of 2