Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lsan_0321 | Lsan_0440 | Lsan_0321 | Lsan_0440 | Hypothetical protein. | Peptidase family M23. | 0.759 |
Lsan_0321 | Lsan_3693 | Lsan_0321 | Lsan_3693 | Hypothetical protein. | Peptidase, M23 family. | 0.408 |
Lsan_0321 | amiB | Lsan_0321 | Lsan_0483 | Hypothetical protein. | N-acetylmuramoyl-L-alanine amidase. | 0.676 |
Lsan_0321 | cphA_2 | Lsan_0321 | Lsan_2400 | Hypothetical protein. | Cyanophycin synthetase. | 0.640 |
Lsan_0321 | cphA_3 | Lsan_0321 | Lsan_3091 | Hypothetical protein. | Cyanophycin synthetase. | 0.640 |
Lsan_0321 | cphA_4 | Lsan_0321 | Lsan_4175 | Hypothetical protein. | Cyanophycin synthetase. | 0.640 |
Lsan_0321 | mltD | Lsan_0321 | Lsan_0310 | Hypothetical protein. | Membrane-bound lytic murein transglycosylase D. | 0.551 |
Lsan_0321 | mrcA | Lsan_0321 | Lsan_0215 | Hypothetical protein. | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | 0.410 |
Lsan_0439 | Lsan_0440 | Lsan_0439 | Lsan_0440 | Pyruvate phosphate dikinase. | Peptidase family M23. | 0.537 |
Lsan_0439 | tyrS | Lsan_0439 | Lsan_0441 | Pyruvate phosphate dikinase. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. | 0.434 |
Lsan_0440 | Lsan_0321 | Lsan_0440 | Lsan_0321 | Peptidase family M23. | Hypothetical protein. | 0.759 |
Lsan_0440 | Lsan_0439 | Lsan_0440 | Lsan_0439 | Peptidase family M23. | Pyruvate phosphate dikinase. | 0.537 |
Lsan_0440 | Lsan_3693 | Lsan_0440 | Lsan_3693 | Peptidase family M23. | Peptidase, M23 family. | 0.699 |
Lsan_0440 | amiB | Lsan_0440 | Lsan_0483 | Peptidase family M23. | N-acetylmuramoyl-L-alanine amidase. | 0.729 |
Lsan_0440 | cphA_2 | Lsan_0440 | Lsan_2400 | Peptidase family M23. | Cyanophycin synthetase. | 0.640 |
Lsan_0440 | cphA_3 | Lsan_0440 | Lsan_3091 | Peptidase family M23. | Cyanophycin synthetase. | 0.640 |
Lsan_0440 | cphA_4 | Lsan_0440 | Lsan_4175 | Peptidase family M23. | Cyanophycin synthetase. | 0.640 |
Lsan_0440 | mltD | Lsan_0440 | Lsan_0310 | Peptidase family M23. | Membrane-bound lytic murein transglycosylase D. | 0.664 |
Lsan_0440 | mrcA | Lsan_0440 | Lsan_0215 | Peptidase family M23. | Putative peptidoglycan synthetase, penicillin-binding protein 1A. | 0.457 |
Lsan_0440 | tyrS | Lsan_0440 | Lsan_0441 | Peptidase family M23. | tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. | 0.558 |
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