Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lsan_0435 | Lsan_0677 | Lsan_0435 | Lsan_0677 | Hypothetical protein. | Regulatory protein (GGDEF domain). | 0.630 |
Lsan_0435 | Lsan_1173 | Lsan_0435 | Lsan_1173 | Hypothetical protein. | Regulatory protein (GGDEF and EAL domains). | 0.630 |
Lsan_0435 | radC | Lsan_0435 | Lsan_1231 | Hypothetical protein. | DNA repair protein RadC; Belongs to the UPF0758 family. | 0.622 |
Lsan_0677 | Lsan_0435 | Lsan_0677 | Lsan_0435 | Regulatory protein (GGDEF domain). | Hypothetical protein. | 0.630 |
Lsan_0677 | Lsan_1173 | Lsan_0677 | Lsan_1173 | Regulatory protein (GGDEF domain). | Regulatory protein (GGDEF and EAL domains). | 0.990 |
Lsan_0677 | comF | Lsan_0677 | Lsan_1680 | Regulatory protein (GGDEF domain). | Competence protein ComF. | 0.677 |
Lsan_0677 | radC | Lsan_0677 | Lsan_1231 | Regulatory protein (GGDEF domain). | DNA repair protein RadC; Belongs to the UPF0758 family. | 0.578 |
Lsan_1173 | Lsan_0435 | Lsan_1173 | Lsan_0435 | Regulatory protein (GGDEF and EAL domains). | Hypothetical protein. | 0.630 |
Lsan_1173 | Lsan_0677 | Lsan_1173 | Lsan_0677 | Regulatory protein (GGDEF and EAL domains). | Regulatory protein (GGDEF domain). | 0.990 |
Lsan_1173 | comF | Lsan_1173 | Lsan_1680 | Regulatory protein (GGDEF and EAL domains). | Competence protein ComF. | 0.677 |
Lsan_1173 | radC | Lsan_1173 | Lsan_1231 | Regulatory protein (GGDEF and EAL domains). | DNA repair protein RadC; Belongs to the UPF0758 family. | 0.578 |
Lsan_3451 | mreC | Lsan_3451 | Lsan_1328 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. | 0.422 |
Lsan_3451 | radC | Lsan_3451 | Lsan_1231 | Septum formation protein Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | DNA repair protein RadC; Belongs to the UPF0758 family. | 0.707 |
comF | Lsan_0677 | Lsan_1680 | Lsan_0677 | Competence protein ComF. | Regulatory protein (GGDEF domain). | 0.677 |
comF | Lsan_1173 | Lsan_1680 | Lsan_1173 | Competence protein ComF. | Regulatory protein (GGDEF and EAL domains). | 0.677 |
comF | radC | Lsan_1680 | Lsan_1231 | Competence protein ComF. | DNA repair protein RadC; Belongs to the UPF0758 family. | 0.798 |
dfp | dut | Lsan_1232 | Lsan_1233 | DNA/pantothenate metabolism flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.985 |
dfp | radC | Lsan_1232 | Lsan_1231 | DNA/pantothenate metabolism flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | DNA repair protein RadC; Belongs to the UPF0758 family. | 0.596 |
dut | dfp | Lsan_1233 | Lsan_1232 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | DNA/pantothenate metabolism flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.985 |
dut | radC | Lsan_1233 | Lsan_1231 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | DNA repair protein RadC; Belongs to the UPF0758 family. | 0.565 |
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