STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lsan_1274Glutamine amidotransferase. (282 aa)    
Predicted Functional Partners:
Lsan_2247
Aminotransferase class V.
 
 
 0.520
Lsan_1400
Putative Metallophosphoesterase.
  
     0.507
Lsan_0997
Methyltransferase.
  
 
  0.488
Lsan_0336
Transmembrane protein.
  
 
  0.485
Lsan_0355
Transmembrane protein.
  
 
  0.485
sufS
Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.456
Lsan_1273
Hypothetical protein.
       0.453
Lsan_1275
Hypothetical protein.
       0.430
Lsan_2749
FAD dependent oxidoreductase.
  
     0.423
Lsan_1194
FAD dependent oxidoreductase.
  
     0.401
Your Current Organism:
Legionella santicrucis
NCBI taxonomy Id: 45074
Other names: ATCC 35301, CCUG 29673, CIP 103849, DSM 23075, JCM 7557, L. santicrucis, Legionella sancticrucis, Legionella santacruxensis, NCTC 11989, strain SC-63-C7
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