Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lsan_2012Hypothetical protein. (853 aa)    
Predicted Functional Partners:
Lsan_2013
Hypothetical protein.
       0.777
Lsan_2014
Hypothetical protein.
       0.501
Lsan_2015
Protein of unknown function DUF1016.
       0.501
Lsan_2016
Phage-related integrase; Belongs to the 'phage' integrase family.
       0.501
Lsan_2011
Hypothetical protein.
       0.497
traL_3
traL protein.
  
     0.450
traL_1
traL protein.
  
     0.446
trbD_2
Conjugal transfer protein trbD.
  
     0.441
trbD_1
Conjugal transfer protein trbD.
  
     0.427
Your Current Organism:
Legionella santicrucis
NCBI taxonomy Id: 45074
Other names: ATCC 35301, CCUG 29673, CIP 103849, DSM 23075, JCM 7557, L. santicrucis, Legionella sancticrucis, Legionella santacruxensis, NCTC 11989, strain SC-63-C7
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