STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lsan_2287Short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (279 aa)    
Predicted Functional Partners:
Lsan_2556
Non-ribosomal peptide synthetase/polyketide synthetase.
  
 0.888
Lsan_1052
acyl-CoA synthetase.
  
 0.863
rkpA
Type I polyketide synthase WcbR.
  
 0.816
Lsan_0832
Polyketide synthase.
  
 0.781
Lsan_2449
3-oxoacyl-ACP reductase.
  
 
  0.777
phaB_6
Acetyoacetyl CoA reductase.
  
     0.764
fabG_3
3-oxoacyl-ACP reductase.
  
     0.759
Lsan_1725
3-oxoacyl-ACP reductase.
  
     0.748
Lsan_0158
Xylene monooxygenase.
   
 0.732
phaB_7
Pteridine reductase.
  
     0.728
Your Current Organism:
Legionella santicrucis
NCBI taxonomy Id: 45074
Other names: ATCC 35301, CCUG 29673, CIP 103849, DSM 23075, JCM 7557, L. santicrucis, Legionella sancticrucis, Legionella santacruxensis, NCTC 11989, strain SC-63-C7
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