Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lsan_0176 | Lsan_3243 | Lsan_0176 | Lsan_3243 | DNA/RNA helicase SNF2. | PPR repeat protein. | 0.539 |
Lsan_0176 | Lsan_3626 | Lsan_0176 | Lsan_3626 | DNA/RNA helicase SNF2. | PPR repeat protein. | 0.539 |
Lsan_0176 | rpoA | Lsan_0176 | Lsan_1732 | DNA/RNA helicase SNF2. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.975 |
Lsan_0176 | rpoB | Lsan_0176 | Lsan_0838 | DNA/RNA helicase SNF2. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.975 |
Lsan_0176 | rpoZ | Lsan_0176 | Lsan_0721 | DNA/RNA helicase SNF2. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.976 |
Lsan_0176 | yhgF | Lsan_0176 | Lsan_2522 | DNA/RNA helicase SNF2. | Transcriptional accessory protein. | 0.519 |
Lsan_2520 | yciA | Lsan_2520 | Lsan_2521 | Hypothetical protein. | Hydrolase. | 0.793 |
Lsan_2520 | yhgF | Lsan_2520 | Lsan_2522 | Hypothetical protein. | Transcriptional accessory protein. | 0.519 |
Lsan_3243 | Lsan_0176 | Lsan_3243 | Lsan_0176 | PPR repeat protein. | DNA/RNA helicase SNF2. | 0.539 |
Lsan_3243 | Lsan_3626 | Lsan_3243 | Lsan_3626 | PPR repeat protein. | PPR repeat protein. | 0.793 |
Lsan_3243 | hepA_2 | Lsan_3243 | Lsan_2723 | PPR repeat protein. | RNA polymerase-associated protein HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.539 |
Lsan_3243 | rpoA | Lsan_3243 | Lsan_1732 | PPR repeat protein. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.742 |
Lsan_3243 | rpoB | Lsan_3243 | Lsan_0838 | PPR repeat protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.709 |
Lsan_3243 | rpoZ | Lsan_3243 | Lsan_0721 | PPR repeat protein. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.691 |
Lsan_3243 | yhgF | Lsan_3243 | Lsan_2522 | PPR repeat protein. | Transcriptional accessory protein. | 0.520 |
Lsan_3626 | Lsan_0176 | Lsan_3626 | Lsan_0176 | PPR repeat protein. | DNA/RNA helicase SNF2. | 0.539 |
Lsan_3626 | Lsan_3243 | Lsan_3626 | Lsan_3243 | PPR repeat protein. | PPR repeat protein. | 0.793 |
Lsan_3626 | hepA_2 | Lsan_3626 | Lsan_2723 | PPR repeat protein. | RNA polymerase-associated protein HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.539 |
Lsan_3626 | rpoA | Lsan_3626 | Lsan_1732 | PPR repeat protein. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.742 |
Lsan_3626 | rpoB | Lsan_3626 | Lsan_0838 | PPR repeat protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.709 |
page 1 of 4