STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lsan_3779IcmC (DotE). (192 aa)    
Predicted Functional Partners:
dotF
Component of the Dot/Icm secretion system.
     
 0.787
dotG
IcmE/DotG protein.
       0.785
Lsan_3782
IcmK protein.
       0.768
icmD_4
IcmD (DotP).
     
 0.664
Lsan_3783
Protein IcmL (DotI).
     
 0.631
icmM
IcmM (DotJ).
     
 0.585
lphA
LphA (DotK).
       0.584
Lsan_3777
IcmJ protein.
       0.445
Lsan_3776
Protein IcmB (DotO).
       0.433
Your Current Organism:
Legionella santicrucis
NCBI taxonomy Id: 45074
Other names: ATCC 35301, CCUG 29673, CIP 103849, DSM 23075, JCM 7557, L. santicrucis, Legionella sancticrucis, Legionella santacruxensis, NCTC 11989, strain SC-63-C7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.