Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lspJType II secretory pathway protein LspJ. (205 aa)    
Predicted Functional Partners:
lspK
Type II secretory pathway protein.
 
 
 0.999
lspI
Type II secretory pathway protein LspI.
 
 0.999
Lwor_0353
General secretion pathway protein LspH.
 
 0.997
lspG
Type II secretory pathway protein LspG.
 
 0.996
lspF
Type II secretory pathway protein LspF.
 
  
 0.961
lspD
Type II protein secretion LspD.
 
  
 0.941
Lwor_1980
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.891
Lwor_2582
General secretion pathway protein C.
 
  
 0.825
yghD
Putative general secretion pathway protein YghD.
 
  
 0.822
Lwor_0165
Protein TraN.
  
 0.820
Your Current Organism:
Legionella worsleiensis
NCBI taxonomy Id: 45076
Other names: ATCC 49508, CCUG 44923, CIP 105114, DSM 21907, L. worsleiensis, NCTC 12377
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