Lwor_0752 protein (Legionella worsleiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lwor_0752

ABC transporter ATP binding transmembrane protein. (588 aa)

Predicted Functional Partners:

Lwor_0751

0.826

metN

0.817

abcT

0.626

Lwor_0149

0.625

Lwor_0760

0.623

msbA

0.619

mrp

0.589

Lwor_1697

0.559

Lwor_0750

0.554

Lwor_0749

0.551

Your Current Organism:

Legionella worsleiensis

NCBI taxonomy Id: 45076
Other names: ATCC 49508, CCUG 44923, CIP 105114, DSM 21907, L. worsleiensis, NCTC 12377

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lwor_0149	Lwor_0751	Lwor_0149	Lwor_0751	Multidrug resistance ABC transporter ATP-binding protein.	ATP-binding transmembrane ABC transporter.	0.621
Lwor_0149	Lwor_0752	Lwor_0149	Lwor_0752	Multidrug resistance ABC transporter ATP-binding protein.	ABC transporter ATP binding transmembrane protein.	0.625
Lwor_0749	Lwor_0750	Lwor_0749	Lwor_0750	GNAT family acetyltransferase.	D-xylose reductase III.	0.794
Lwor_0749	Lwor_0751	Lwor_0749	Lwor_0751	GNAT family acetyltransferase.	ATP-binding transmembrane ABC transporter.	0.551
Lwor_0749	Lwor_0752	Lwor_0749	Lwor_0752	GNAT family acetyltransferase.	ABC transporter ATP binding transmembrane protein.	0.551
Lwor_0750	Lwor_0749	Lwor_0750	Lwor_0749	D-xylose reductase III.	GNAT family acetyltransferase.	0.794
Lwor_0750	Lwor_0751	Lwor_0750	Lwor_0751	D-xylose reductase III.	ATP-binding transmembrane ABC transporter.	0.554
Lwor_0750	Lwor_0752	Lwor_0750	Lwor_0752	D-xylose reductase III.	ABC transporter ATP binding transmembrane protein.	0.554
Lwor_0751	Lwor_0149	Lwor_0751	Lwor_0149	ATP-binding transmembrane ABC transporter.	Multidrug resistance ABC transporter ATP-binding protein.	0.621
Lwor_0751	Lwor_0749	Lwor_0751	Lwor_0749	ATP-binding transmembrane ABC transporter.	GNAT family acetyltransferase.	0.551
Lwor_0751	Lwor_0750	Lwor_0751	Lwor_0750	ATP-binding transmembrane ABC transporter.	D-xylose reductase III.	0.554
Lwor_0751	Lwor_0752	Lwor_0751	Lwor_0752	ATP-binding transmembrane ABC transporter.	ABC transporter ATP binding transmembrane protein.	0.826
Lwor_0751	Lwor_0760	Lwor_0751	Lwor_0760	ATP-binding transmembrane ABC transporter.	Multidrug resistance ABC transporter ATP binding protein.	0.623
Lwor_0751	Lwor_1697	Lwor_0751	Lwor_1697	ATP-binding transmembrane ABC transporter.	Ankyrin repeats (3 copies).	0.514
Lwor_0751	abcT	Lwor_0751	Lwor_0093	ATP-binding transmembrane ABC transporter.	ABC transporter ATP-binding protein.	0.625
Lwor_0751	mrp	Lwor_0751	Lwor_0898	ATP-binding transmembrane ABC transporter.	ATPase; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.	0.589
Lwor_0751	msbA	Lwor_0751	Lwor_0891	ATP-binding transmembrane ABC transporter.	ABC transporter, ATP binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.	0.612
Lwor_0752	Lwor_0149	Lwor_0752	Lwor_0149	ABC transporter ATP binding transmembrane protein.	Multidrug resistance ABC transporter ATP-binding protein.	0.625
Lwor_0752	Lwor_0749	Lwor_0752	Lwor_0749	ABC transporter ATP binding transmembrane protein.	GNAT family acetyltransferase.	0.551
Lwor_0752	Lwor_0750	Lwor_0752	Lwor_0750	ABC transporter ATP binding transmembrane protein.	D-xylose reductase III.	0.554