Lwor_1607 protein (Legionella worsleiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Lwor_1607

ABC transporter ATP-binding protein. (312 aa)

Predicted Functional Partners:

Lwor_1608

0.998

Lwor_1606

0.968

atpD

0.791

atpA

0.780

atpG

0.775

atpC

0.770

Lwor_0451

0.761

atpB

0.699

atpH

0.699

atpE

0.661

Your Current Organism:

Legionella worsleiensis

NCBI taxonomy Id: 45076
Other names: ATCC 49508, CCUG 44923, CIP 105114, DSM 21907, L. worsleiensis, NCTC 12377

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Lwor_0451	Lwor_1607	Lwor_0451	Lwor_1607	ABC transporter permease.	ABC transporter ATP-binding protein.	0.761
Lwor_1606	Lwor_1607	Lwor_1606	Lwor_1607	Hemolysin D.	ABC transporter ATP-binding protein.	0.968
Lwor_1606	Lwor_1608	Lwor_1606	Lwor_1608	Hemolysin D.	ABC transporter permease.	0.967
Lwor_1607	Lwor_0451	Lwor_1607	Lwor_0451	ABC transporter ATP-binding protein.	ABC transporter permease.	0.761
Lwor_1607	Lwor_1606	Lwor_1607	Lwor_1606	ABC transporter ATP-binding protein.	Hemolysin D.	0.968
Lwor_1607	Lwor_1608	Lwor_1607	Lwor_1608	ABC transporter ATP-binding protein.	ABC transporter permease.	0.998
Lwor_1607	atpA	Lwor_1607	Lwor_1213	ABC transporter ATP-binding protein.	ATP synthase F0F1 subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.780
Lwor_1607	atpB	Lwor_1607	Lwor_1209	ABC transporter ATP-binding protein.	ATP synthase F0 subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	0.699
Lwor_1607	atpC	Lwor_1607	Lwor_1216	ABC transporter ATP-binding protein.	F1 sector of membrane-bound ATP synthase, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.770
Lwor_1607	atpD	Lwor_1607	Lwor_1215	ABC transporter ATP-binding protein.	ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.791
Lwor_1607	atpE	Lwor_1607	Lwor_1210	ABC transporter ATP-binding protein.	ATP synthase F0F1 subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.661
Lwor_1607	atpG	Lwor_1607	Lwor_1214	ABC transporter ATP-binding protein.	ATP synthase F0F1 subunit gamma; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.775
Lwor_1607	atpH	Lwor_1607	Lwor_1212	ABC transporter ATP-binding protein.	ATP synthase F1 subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.699
Lwor_1608	Lwor_1606	Lwor_1608	Lwor_1606	ABC transporter permease.	Hemolysin D.	0.967
Lwor_1608	Lwor_1607	Lwor_1608	Lwor_1607	ABC transporter permease.	ABC transporter ATP-binding protein.	0.998
atpA	Lwor_1607	Lwor_1213	Lwor_1607	ATP synthase F0F1 subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	ABC transporter ATP-binding protein.	0.780
atpA	atpB	Lwor_1213	Lwor_1209	ATP synthase F0F1 subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	ATP synthase F0 subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	0.999
atpA	atpC	Lwor_1213	Lwor_1216	ATP synthase F0F1 subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	F1 sector of membrane-bound ATP synthase, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
atpA	atpD	Lwor_1213	Lwor_1215	ATP synthase F0F1 subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.999
atpA	atpE	Lwor_1213	Lwor_1210	ATP synthase F0F1 subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	ATP synthase F0F1 subunit C; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.999