Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lwor_2038Dot/Icm T4SS effector. (828 aa)    
Predicted Functional Partners:
Lwor_0172
TraI.
  
     0.770
Lwor_0169
Protein TraG.
  
     0.761
rssA
Esterase of the alpha-beta hydrolase superfamily protein.
  
     0.761
Lwor_0165
Protein TraN.
  
     0.756
Lwor_2111
Potassium efflux system KefA.
  
     0.750
Lwor_0158
Putative conjugative transfer protein TraB.
  
     0.749
Lwor_0763
Putative phage repressor.
  
     0.746
Lwor_0164
Putative conjugative transfer protein TrbC.
  
     0.741
Lwor_1717
DamX-related protein.
  
     0.731
Lwor_1561
Photosystem I assembly protein Ycf3.
  
     0.730
Your Current Organism:
Legionella worsleiensis
NCBI taxonomy Id: 45076
Other names: ATCC 49508, CCUG 44923, CIP 105114, DSM 21907, L. worsleiensis, NCTC 12377
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