Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rtxA2_1Structural toxin protein RtxA. (1486 aa)    
Predicted Functional Partners:
Lwor_2379
Hypothetical protein.
 
 
 
0.808
rtxA
Structural toxin protein RtxA.
 
  
 
0.793
Lwor_2378
Hypothetical protein.
 
    
0.710
Lwor_2377
Hypothetical protein.
 
  
 
0.676
Lwor_2375
Hypothetical protein.
 
    
0.666
ftsK
Cell division protein FtsK.
    
   0.665
Lwor_2376
Hypothetical protein.
 
    
0.654
Lwor_2518
Agglutination protein.
 
 
  0.645
lasB
Class 4 metalloprotease; Extracellular zinc metalloprotease.
 
 
 0.643
lssD
Secretion system protein D.
 
   
 0.599
Your Current Organism:
Legionella worsleiensis
NCBI taxonomy Id: 45076
Other names: ATCC 49508, CCUG 44923, CIP 105114, DSM 21907, L. worsleiensis, NCTC 12377
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