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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtxA2_1Structural toxin protein RtxA. (1486 aa)    
Predicted Functional Partners:
lasB
Class 4 metalloprotease; Extracellular zinc metalloprotease.
 
 
 0.855
Lwor_2379
Hypothetical protein.
 
 
 
0.854
rtxA
Structural toxin protein RtxA.
 
  
 
0.792
Lwor_2377
Hypothetical protein.
 
 
 
0.769
Lwor_0801
Serine metalloprotease; Belongs to the peptidase S8 family.
   
  0.765
ftsK
Cell division protein FtsK.
    
   0.750
Lwor_2378
Hypothetical protein.
 
    
0.711
ctpA
Carboxy-terminal protease; Belongs to the peptidase S41A family.
   
   0.686
Lwor_2375
Hypothetical protein.
 
    
0.666
Lwor_2376
Hypothetical protein.
 
    
0.655
Your Current Organism:
Legionella worsleiensis
NCBI taxonomy Id: 45076
Other names: ATCC 49508, CCUG 44923, CIP 105114, DSM 21907, L. worsleiensis, NCTC 12377
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