STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c0708Ferredoxin A; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (113 aa)    
Predicted Functional Partners:
PHZ_c1697
Ferredoxin oxidoreductase alpha subunit.
  
  
 0.896
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.864
PHZ_c1698
Glutamate synthase (NADPH) small chain.
  
 
 0.664
PHZ_c0605
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein.
  
  
 0.646
PHZ_c2382
Pyruvate decarboxylase:Pyruvate ferredoxin/flavodoxin oxidoreductase.
  
  
 0.646
PHZ_c0709
Ribosome-associated heat shock protein; Implicated in the recycling of the 50S subunit (S4 paralog).
       0.586
PHZ_c0710
Superfamily II DNA and RNA helicase.
       0.546
cysN
Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase cysN/C; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.531
PHZ_c1696
Ferredoxin oxidoreductase beta subunit.
  
  
 0.525
sdhA
Succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
  
 0.512
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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