STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c0876Hydrolase, haloacid dehalogenase-like family. (222 aa)    
Predicted Functional Partners:
PHZ_c3139
Alpha-glucosyltransferase.
 
  
 0.757
PHZ_c2737
Conserved hypothetical protein.
  
    0.672
serB
Phosphoserine phosphatase.
  
  
 0.662
PHZ_c0451
Putative 6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
    0.581
PHZ_c2157
Putative membrane protein.
  
  
 0.562
PHZ_c2272
Permease of the major facilitator superfamily.
  
  
 0.562
rsuA
Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family.
      0.479
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.478
galE
UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
   
 0.477
PHZ_c0871
Transcriptional regulator; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
 
     0.439
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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