STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c1262ATPase, AAA family. (434 aa)    
Predicted Functional Partners:
PHZ_c1715
HesB/YadR/YfhF family protein; Belongs to the HesB/IscA family.
 
      0.686
recQ
ATP-dependent DNA helicase RecQ.
   
 
 0.665
PHZ_c3505
Cell division protein FtsK.
  
 0.658
PHZ_c1261
Serine protease; Belongs to the peptidase S1C family.
       0.652
PHZ_c1264
Ribosomal large subunit pseudouridine synthase D.
      0.652
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.607
PHZ_c1263
Conserved hypothetical protein.
       0.592
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.567
tetA
Tetracycline resistance protein.
       0.479
PHZ_c1256
Type I phosphodiesterase/nucleotide pyrophosphatase family protein.
 
     0.452
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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