STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trbIConjugal transfer protein. (381 aa)    
Predicted Functional Partners:
trbG
Conjugal transfer protein.
 0.999
trbL
Conjugal transfer protein.
 
  
 0.995
trbF
Conjugal transfer protein.
  
 0.995
trbE
Conjugal transfer protein.
 
 0.994
trbC
Conjugal transfer protein.
 
  
 0.988
trbD
Conjugal transfer protein.
 
  
 0.987
trbJ
Conjugal transfer protein.
 
  
 0.987
trbB
Conjugal transfer protein.
 
  
 0.986
PHZ_c1521
Conserved hypothetical protein.
 
   
 0.944
virB9
Type IV secretory pathway, VirB9 component.
 
 
 0.936
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.