STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c1521Conserved hypothetical protein. (76 aa)    
Predicted Functional Partners:
trbL
Conjugal transfer protein.
 
     0.946
trbF
Conjugal transfer protein.
 
     0.946
trbI
Conjugal transfer protein.
 
   
 0.944
trbG
Conjugal transfer protein.
 
   
 0.942
trbJ
Conjugal transfer protein.
 
     0.878
trbD
Conjugal transfer protein.
 
     0.874
trbC
Conjugal transfer protein.
 
     0.868
trbE
Conjugal transfer protein.
 
     0.861
PHZ_c1510
Conserved hypothetical protein.
 
     0.789
PHZ_c1508
Type IV secretory pathway, VirD2 component (relaxase).
 
     0.776
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.