Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c1906Conserved hypothetical protein. (735 aa)    
Predicted Functional Partners:
PHZ_c0536
Glutamate-cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
  
  
 0.767
atsA
Arylsulfatase.
  
   0.744
PHZ_c2252
Sulfatase family protein.
  
   0.744
PHZ_c1717
Aminotransferase, class V; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.737
PHZ_c2931
Conserved hypothetical protein.
  
  
 0.737
PHZ_c2210
Conserved hypothetical protein.
   
    0.628
PHZ_c0537
Conserved hypothetical protein.
 
     0.622
PHZ_c0754
Retinal pigment epithelial membrane protein.
  
   
 0.573
PHZ_c1924
Conserved hypothetical protein.
 
     0.572
PHZ_c1907
RNA polymerase sigma-70 factor, ECF subfamily.
  
  
 0.492
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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