STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c2022Transcriptional regulator,LuxR family. (255 aa)    
Predicted Functional Partners:
PHZ_c0697
Sensor histidine kinase.
  
 
 0.880
PHZ_c2078
Sensor histidine kinase/response regulator.
  
 
 0.819
PHZ_c2079
Sensor histidine kinase/response regulator.
  
 
 0.647
PHZ_c2207
Diguanylate phosphodiesterase.
 
 
 0.627
PHZ_c1033
Sensor histidine kinase/response regulator.
   
 
 0.592
PHZ_c2821
Response regulator receiver.
   
 
 0.585
PHZ_c2021
TonB-dependent receptor.
   
   0.582
PHZ_c1031
Sensor histidine kinase.
  
 
 0.575
PHZ_c2020
acyl-CoA dehydrogenase family protein.
       0.533
PHZ_c2019
Transcriptional regulator.
     
 0.523
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.