STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c2762Conserved hypothetical protein. (247 aa)    
Predicted Functional Partners:
PHZ_c2761
ATP-dependent RNA helicase, DEAD/DEAH family.
    0.981
PHZ_c3347
DNA ligase, ATP-dependent.
 
   
 0.825
PHZ_c3348
Conserved hypothetical protein.
 
     0.797
PHZ_c2763
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase.
       0.714
PHZ_c0224
Conserved hypothetical protein.
  
     0.629
PHZ_c2760
SAM-dependent methyltransferase.
       0.543
PHZ_c3267
Nucleotidyltransferase/DNA polymerase involved in DNA repair.
  
     0.487
PHZ_c1290
Conserved hypothetical protein.
  
     0.424
PHZ_c3266
Conserved hypothetical protein.
  
     0.424
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.