STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
celD1,4-beta-D-glucan glucohydrolase D. (828 aa)    
Predicted Functional Partners:
PHZ_c3139
Alpha-glucosyltransferase.
  
 
 0.936
PHZ_c2929
Glucan 1,4-beta-glucosidase.
  
  
 
0.929
PHZ_c2076
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
    
 0.915
PHZ_c2923
Pass1-related protein.
 
     0.822
PHZ_c2925
TonB-dependent receptor.
 
     0.820
PHZ_c2927
Transcriptional regulator, LacI family.
 
   
 0.815
PHZ_c2922
Tryptophan halogenase.
 
     0.807
PHZ_c2924
Conserved hypothetical protein.
 
     0.705
PHZ_c2472
Transcriptional regulator, LacI family.
 
   
 0.683
PHZ_c2460
TonB-dependent receptor.
 
   
 0.672
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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