STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaEFlp pilus assembly protein, ATPase. (388 aa)    
Predicted Functional Partners:
tadB
Flp pilus assembly protein.
 
  
 0.983
PHZ_c3027
Flp pilus assembly protein CpaB.
 
  
 0.980
cpaF
Flp pilus assembly protein ATPase CpaF.
 
  
 0.967
cpaC
Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.966
tadC
Flp pilus assembly protein.
 
  
 0.956
PHZ_c3001
Flp pilus assembly protein TadB.
 
  
 0.928
cpaB
Pilus assembly protein CpaB.
 
  
 0.922
PHZ_c3002
Flp pilus assembly protein TadC.
 
  
 0.903
PHZ_c3000
Pilus assembly protein CpaF cpaF.
 
  
 0.862
PHZ_c2998
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.858
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.