STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c3117Conserved hypothetical protein; Belongs to the UPF0335 family. (93 aa)    
Predicted Functional Partners:
PHZ_c0866
Conserved hypothetical protein.
  
   
 0.862
PHZ_c3293
Conserved hypothetical protein.
  
   
 0.848
PHZ_c1663
Small protein A (tmRNA-binding).
  
   
 0.829
PHZ_c3116
Hypothetical protein.
       0.814
recO
Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination.
  
     0.762
PHZ_c0201
Conserved hypothetical protein.
  
     0.751
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.733
PHZ_c0007
Conserved hypothetical protein.
  
     0.717
PHZ_c0200
Helicase, UvrD/Rep family; Belongs to the helicase family. UvrD subfamily.
  
     0.709
PHZ_c2856
Conserved hypothetical protein.
  
     0.706
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.