STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHZ_c3208Transcriptional regulator, TetR family. (410 aa)    
Predicted Functional Partners:
PHZ_c3209
Predicted transcriptional regulator.
     
 0.577
PHZ_c3309
Transcriptional regulator, TetR family.
  
     0.477
PHZ_c0726
Conserved hypothetical protein.
  
     0.454
PHZ_c3245
acetyl-CoA acyltransferase.
 
     0.448
PHZ_c3246
Nucleic-acid-binding protein containing a Zn-ribbon.
  
     0.419
PHZ_c0625
Conserved hypothetical protein.
  
     0.406
aceA
Isocitrate lyase.
     
 0.404
Your Current Organism:
Phenylobacterium zucineum
NCBI taxonomy Id: 450851
Other names: P. zucineum HLK1, Phenylobacterium zucineum HLK1, Phenylobacterium zucineum str. HLK1, Phenylobacterium zucineum strain HLK1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.