STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARG96293.1Peptidase M4; Extracellular zinc metalloprotease. (554 aa)    
Predicted Functional Partners:
ARG96292.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.732
ARG97061.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  
 0.642
cat
Type B chloramphenicol O-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.508
B6N58_02355
Thiamine biosynthesis protein ThiJ; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.507
ARG96372.1
Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.464
ARG96686.1
Zinc transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
ARG96583.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.408
Your Current Organism:
Tatlockia micdadei
NCBI taxonomy Id: 451
Other names: ATCC 33218, CCUG 11882, CIP 103882, DSM 16640, Legionella micdadei, Legionella pittsburghensis, NCTC 11371, T. micdadei, strain TATLOCK
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