STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARG96666.1Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)    
Predicted Functional Partners:
icmE
Type IV secretion protein IcmK; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.710
ARG97754.1
L,D-transpeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.666
enhA
L,D-transpeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
ARG97596.1
L,D-transpeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
ARG97948.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.607
ARG96474.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
icmF
Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.577
DotU
Type IV secretion protein DotU; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
ARG96447.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
ARG97808.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
Your Current Organism:
Tatlockia micdadei
NCBI taxonomy Id: 451
Other names: ATCC 33218, CCUG 11882, CIP 103882, DSM 16640, Legionella micdadei, Legionella pittsburghensis, NCTC 11371, T. micdadei, strain TATLOCK
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.