STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnfHRnfH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. (91 aa)    
Predicted Functional Partners:
ARG98474.1
Ubiquinone-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.910
ARG98475.1
Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.800
ARG96290.1
[Fe-S]-binding protein; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
 
   
 0.780
ARG98476.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.567
sspB
Stringent starvation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.558
pncA
Nicotinamidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.556
pncB
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
       0.556
trkA
Trk system potassium transport protein TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.499
cc
Cytochrome c4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
trkH
Potassium transporter; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
 
     0.474
Your Current Organism:
Tatlockia micdadei
NCBI taxonomy Id: 451
Other names: ATCC 33218, CCUG 11882, CIP 103882, DSM 16640, Legionella micdadei, Legionella pittsburghensis, NCTC 11371, T. micdadei, strain TATLOCK
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.