A0A0N5AD68 protein (Syphacia muris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0N5AD68

Uncharacterized protein. (206 aa)

Predicted Functional Partners:

A0A0N5A9E2

0.954

A0A0N5AFV5

0.954

A0A158R624

0.954

A0A0N5AI41

0.911

A0A0N5AI47

0.911

A0A0N5AMC5

0.900

A0A0N5ANL0

0.900

A0A0N5AW45

0.900

A0A0N5AUH4

0.832

A0A0N5AX19

0.832

Your Current Organism:

Syphacia muris

NCBI taxonomy Id: 451379
Other names: S. muris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N5A9E2	A0A0N5AD68	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A0N5A9E2	A0A0N5AI41	Uncharacterized protein.	Uncharacterized protein.	0.764
A0A0N5A9E2	A0A0N5AI47	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A0N5A9E2	A0A0N5AMC5	Uncharacterized protein.	Uncharacterized protein.	0.764
A0A0N5A9E2	A0A0N5ANL0	Uncharacterized protein.	Uncharacterized protein.	0.764
A0A0N5A9E2	A0A0N5AW45	Uncharacterized protein.	Uncharacterized protein.	0.767
A0A0N5AD68	A0A0N5A9E2	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A0N5AD68	A0A0N5AFV5	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A0N5AD68	A0A0N5AI41	Uncharacterized protein.	Uncharacterized protein.	0.911
A0A0N5AD68	A0A0N5AI47	Uncharacterized protein.	Uncharacterized protein.	0.911
A0A0N5AD68	A0A0N5AMC5	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0N5AD68	A0A0N5ANL0	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0N5AD68	A0A0N5AUH4	Uncharacterized protein.	Uncharacterized protein.	0.832
A0A0N5AD68	A0A0N5AW45	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A0N5AD68	A0A0N5AX19	Uncharacterized protein.	Uncharacterized protein.	0.832
A0A0N5AD68	A0A158R624	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A0N5AFV5	A0A0N5AD68	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A0N5AFV5	A0A0N5AI41	Uncharacterized protein.	Uncharacterized protein.	0.764
A0A0N5AFV5	A0A0N5AI47	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A0N5AFV5	A0A0N5AMC5	Uncharacterized protein.	Uncharacterized protein.	0.765