A0A0N5API4 protein (Syphacia muris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0N5API4

Uncharacterized protein. (326 aa)

Predicted Functional Partners:

A0A158R3Y7

0.976

A0A0N5AT24

0.934

A0A0N5ARZ9

0.756

A0A0N5ABV6

0.716

A0A0N5ACI4

0.672

A0A0N5AY45

0.667

A0A0N5AL21

0.662

A0A0N5AVR4

0.662

A0A0N5AHD3

0.661

A0A0N5AFW7

0.655

Your Current Organism:

Syphacia muris

NCBI taxonomy Id: 451379
Other names: S. muris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N5ABV6	A0A0N5ACI4	Uncharacterized protein.	Uncharacterized protein.	0.469
A0A0N5ABV6	A0A0N5AFW7	Uncharacterized protein.	Homeobox domain-containing protein.	0.411
A0A0N5ABV6	A0A0N5AHD3	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A0N5ABV6	A0A0N5AL21	Uncharacterized protein.	Uncharacterized protein.	0.619
A0A0N5ABV6	A0A0N5API4	Uncharacterized protein.	Uncharacterized protein.	0.716
A0A0N5ABV6	A0A0N5ARZ9	Uncharacterized protein.	Homeobox domain-containing protein.	0.411
A0A0N5ABV6	A0A0N5AT24	Uncharacterized protein.	LID domain-containing protein.	0.971
A0A0N5ABV6	A0A0N5AVR4	Uncharacterized protein.	Uncharacterized protein.	0.437
A0A0N5ABV6	A0A0N5AY45	Uncharacterized protein.	Homeobox domain-containing protein.	0.469
A0A0N5ABV6	A0A158R3Y7	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A0N5ACI4	A0A0N5ABV6	Uncharacterized protein.	Uncharacterized protein.	0.469
A0A0N5ACI4	A0A0N5API4	Uncharacterized protein.	Uncharacterized protein.	0.672
A0A0N5ACI4	A0A0N5AT24	Uncharacterized protein.	LID domain-containing protein.	0.780
A0A0N5AFW7	A0A0N5ABV6	Homeobox domain-containing protein.	Uncharacterized protein.	0.411
A0A0N5AFW7	A0A0N5API4	Homeobox domain-containing protein.	Uncharacterized protein.	0.655
A0A0N5AFW7	A0A0N5AT24	Homeobox domain-containing protein.	LID domain-containing protein.	0.768
A0A0N5AHD3	A0A0N5ABV6	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A0N5AHD3	A0A0N5API4	Uncharacterized protein.	Uncharacterized protein.	0.661
A0A0N5AHD3	A0A0N5AT24	Uncharacterized protein.	LID domain-containing protein.	0.861
A0A0N5AHD3	A0A158R3Y7	Uncharacterized protein.	Uncharacterized protein.	0.463