STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lspi_0019Ribonuclease, T2 family; Belongs to the RNase T2 family. (381 aa)    
Predicted Functional Partners:
lidK
(CDP-alcohol) phosphatidyltransferase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.609
Lspi_0020
Flavoprotein.
       0.606
Lspi_0018
Hypothetical protein.
       0.542
Lspi_0023
KQDN repeat-containing protein.
 
     0.540
Lspi_1438
LuxR family transcriptional regulator.
  
     0.526
lssA
Legionella secretion system protein A.
  
     0.503
cspA
Cold shock protein.
       0.496
Lspi_0024
TPR repeat containing protein.
 
     0.461
Lspi_0787
CAAX amino terminal protease self- immunity.
  
     0.454
Lspi_0025
Hypothetical protein.
 
     0.453
Your Current Organism:
Legionella spiritensis
NCBI taxonomy Id: 452
Other names: ATCC 35249, CCUG 29715, CCUG 31118, CIP 103850, DSM 19324, JCM 7562, L. spiritensis, NCTC 11990, strain Mount Saint Helens 9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.