Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lspi_0262ABC transporter, ATP binding/permease protein MsbA. (610 aa)    
Predicted Functional Partners:
potA
Spermidine/putrescine transport system ATP-binding protein PotA.
 
    
0.836
capD
Nucleoside-diphosphate sugar epimerase.
       0.742
Lspi_0263
Short chain dehydrogenase.
   
  0.674
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.603
ftsE
Cell division ATP transporter FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 
0.574
Lspi_0259
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
   
   0.511
hdaH
Histone deacetylase-like amidohydrolase.
  
  0.497
dnaJ_1
Molecular chaperone DnaJ.
  
 
   0.493
Lspi_0260
LphB.
       0.485
arp
Ankyrin repeat protein.
  
 
  0.481
Your Current Organism:
Legionella spiritensis
NCBI taxonomy Id: 452
Other names: ATCC 35249, CCUG 29715, CCUG 31118, CIP 103850, DSM 19324, JCM 7562, L. spiritensis, NCTC 11990, strain Mount Saint Helens 9
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