Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
sufAFe-S cluster assembly protein; Belongs to the HesB/IscA family. (121 aa)    
Predicted Functional Partners:
iscS
Cysteine desulfurase NifS.
 
 
 0.990
nifU
Nitrogen fixation protein NifU.
  
 
 0.964
Lspi_0506
Putative iron-sulpher cluster proteins NifU.
  
 
 0.955
trmJ
RNA methyltransferase; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA.
  
    0.852
Lspi_0200
Rrf2 family transporter protein.
  
  
 0.808
erpA
Iron-sulfur cluster assembly accessory protein; Required for insertion of 4Fe-4S clusters for at least IspG.
 
    0.796
Lspi_0201
Cysteine desulfurase.
  
 
 0.773
Lspi_0202
ATP transporter ATP- binding protein.
  
 
 0.754
suhB_1
Inositol-1-monophosphatase.
       0.742
sufD
Component of SufBCD complex.
  
 
 0.705
Your Current Organism:
Legionella spiritensis
NCBI taxonomy Id: 452
Other names: ATCC 35249, CCUG 29715, CCUG 31118, CIP 103850, DSM 19324, JCM 7562, L. spiritensis, NCTC 11990, strain Mount Saint Helens 9
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